Expertise

Scientific and Computational Expertise

Bridging computational analysis with experimental biology.

My expertise combines computational biology, experimental neuroscience, pharmacology, and translational research. I develop integrative approaches that connect large-scale biological data with disease mechanisms, therapeutic development, and decision-making — bridging computational analysis with experimental biology.

Full technical CV

Leadership & Cross-functional Collaboration

Leading multidisciplinary bioinformatics projects, mentoring researchers, and collaborating across biology, chemistry, pharmacology, translational medicine and clinical research.

Neurobiology & Neurovascular Biology

Interactions between neurons, astrocytes, endothelial cells, mural cells, microglia and the extracellular matrix — blood-brain barrier biology, vascular specialization, neuroinflammation, epilepsy, stroke and cerebral small vessel disease.

Pharmacology & Translational Science

Pharmacokinetic interpretation, formulation-supporting analyses, in vitro-to-in vivo translation, and integration of molecular and functional data to support therapeutic decision-making and biomarker development.

Animal Models & Rodent Surgery

Designing and conducting studies using rodent models of neurological and vascular disease — disease induction, phenotypic characterization, tissue analysis. Licensed and certified for surgical procedures on anesthetized rodents.

Quantitative Imaging & Digital Pathology

Microscopy, quantitative image analysis, histopathology, MRI-linked tissue analysis and vascular morphometry — correlating transcriptomic change with tissue architecture and pathological phenotype.

Computational Biology, Bioinformatics & Reproducible Data Science

Scalable, reproducible workflows for RNA-seq, targeted sequencing, RNA editing, proteomics, imaging and pathology-linked data — using modern pipelines, statistical analysis, version control, automated reporting and high-performance computing.

Transcriptomics, Multi-omics & Biomarker Discovery

Integrating bulk RNA-seq, single-cell RNA-seq, spatial transcriptomics, proteomics, secretomics, imaging, histopathology and public datasets to identify mechanisms, characterize cellular states, prioritize targets and discover biomarkers.

RNA Editing & RNA Therapeutics

Computational analysis of ADAR-mediated RNA editing: quantifying editing efficiency, evaluating target engagement, characterizing isoform-specific effects, assessing off-target editing and identifying transcriptomic safety signals.

Technical & Methodological

The toolkit

Experimental models & physiology

  • Rodent models of epilepsy
  • stroke
  • cerebral ischemia and cerebral small vessel disease
  • surgical procedures under EU laboratory-animal regulations
  • laser Doppler flowmetry
  • cerebral blood-flow analysis
  • cell culture
  • in situ hybridization

Imaging, histopathology & neuropathology

  • Confocal microscopy
  • expansion microscopy
  • immunohistochemistry
  • MRI-histopathology correlation
  • autopsy tissue phenotyping
  • white-matter lesion analysis
  • vessel segmentation and classification
  • quantitative image analysis

Omics & computational biology

  • Bulk RNA-seq
  • single-cell RNA-seq
  • spatial transcriptomics
  • proteomics
  • secretomics
  • public dataset reanalysis
  • pathway and network analysis
  • multimodal integration
  • statistical modeling
  • data visualization

RNA therapeutics & translational bioinformatics

  • Target engagement
  • editing-efficiency assessment
  • on-/off-target prediction for oligonucleotide drugs
  • high-throughput screening analysis
  • lead selection
  • pharmacodynamic analysis
  • liver and CNS disease-model characterization

Reproducible infrastructure

  • R
  • Python
  • Linux
  • HPC environments
  • Nextflow workflows
  • automated reports
  • FAIR data management
  • Dotmatics protocol and data infrastructure

Leadership & collaboration

  • Project management
  • team supervision
  • cross-functional collaboration
  • manuscript strategy
  • translational coordination
  • mentoring across academic and biotechnology settings

Languages: English · Marathi / Hindi · German (B1)